Source code for model_package.Tardigrade_MOOSE.summarize_micro_macro_force_displacements

#!python
import argparse
import pathlib
import sys

import matplotlib.pyplot
import numpy
import pandas

from finite_stVK_calculation import finite_stVK_calculation
from summarize_micro_macro_lateral_displacements import plot_convergence


[docs] def plot_force_displacement(csv_files, plot_labels, output_file, output_csv=None, convergence_plot=None, force_field='force', disp_field='disp', x_label='Displacement (mm)', y_label='Force (N)', brazil_exp_file=None): '''Plot multiple force displacement plots against each other :param list csv_files: The csv files containing force results :param list plot_labels: The plot labels, same size as ``csv_files`` :param str output_file: The name of the output file of collected results :param str output_csv: The name of the output csv file :param str convergence_plot: Optional file name for convergence plot :param str force_field: The column label for force values :param str disp_field: The column label for displacement values :param str x_label: The label (without units) for the x data :param str y_label: The label (without units) for the y data :returns: Write ``output_file`` and ``output_csv`` ''' matplotlib.pyplot.figure() dfs = [] final_forces = [] # loop through csvs, plot, and append to output DataFrame for csv_file, label in zip(csv_files, plot_labels): df = pandas.read_csv(csv_file, sep=",") matplotlib.pyplot.plot(df[disp_field], df[force_field], label=label) final_forces.append(df[force_field].values[-1]) df = df.assign(id=[label for i in range(len(df.index))]) dfs.append(df) # Optionally plot from Brazil disk experimental data if brazil_exp_file is not None: exp_df = pandas.read_csv(brazil_exp_file, sep=',') exps = numpy.unique([text.split('_')[0] for text in list(exp_df.columns)]) for exp, i in zip(exps, range(len(exps))): if i == 0: matplotlib.pyplot.plot(exp_df[f'{exp}_x'], exp_df[f'{exp}_y'], '--', color='grey', label='experiments') else: matplotlib.pyplot.plot(exp_df[f'{exp}_x'], exp_df[f'{exp}_y'], '--', color='grey') matplotlib.pyplot.xlabel(x_label) matplotlib.pyplot.ylabel(y_label) matplotlib.pyplot.tight_layout() matplotlib.pyplot.legend() matplotlib.pyplot.savefig(output_file, dpi=300) # create new dataframe and output csv if output_csv: out_df = pandas.concat(dfs, axis=1) out_df.to_csv(output_csv, header=True, sep=',', index=False) # Convergence plot if convergence_plot: convergence_value, _ = finite_stVK_calculation() elements = [int(label.split(' ')[0]) for label in plot_labels] plot_convergence(convergence_plot, final_forces, '-1*Force (N)', elements, -1*convergence_value) return 0
def get_parser(): script_name = pathlib.Path(__file__) prog = f"python {script_name.name} " cli_description = "Plot mutliple force displacement plots against each other" parser=argparse.ArgumentParser(description=cli_description, prog=prog) parser.add_argument('--csv-files', nargs="+", required=True, help="The csv files containing force results") parser.add_argument('--plot-labels', nargs="+", required=True, help="The plot labels, same size as '--csv-files'") parser.add_argument('--output-file', type=str, required=True, help="The name of the output plot") parser.add_argument('--output-csv', type=str, required=False, default=None, help="The name of the output csv file") parser.add_argument('--convergence-plot', type=str, required=False, default=None, help="Optional file name for convergence plot") parser.add_argument('--force-field', type=str, required=False, default='force', help="The column label for force values") parser.add_argument('--disp-field', type=str, required=False, default='disp', help="Optional column label for displacement values") parser.add_argument("--x-label", type=str, required=False, default='Displacement (mm)', help="The label for the x data") parser.add_argument("--y-label", type=str, required=False, default='Force (N)', help="The label for the y data") parser.add_argument("--brazil-exp-file", type=str, required=False, default=None, help="Optional csv file containing Brazil disk data") return parser if __name__ == '__main__': parser = get_parser() args, unknown = parser.parse_known_args() sys.exit(plot_force_displacement(csv_files=args.csv_files, plot_labels=args.plot_labels, output_file=args.output_file, output_csv=args.output_csv, convergence_plot=args.convergence_plot, force_field=args.force_field, disp_field=args.disp_field, x_label=args.x_label, y_label=args.y_label, brazil_exp_file=args.brazil_exp_file, ))